Performance & Parallelism

Parallelization

• MPI for distributed computation
• OpenMP for shared-memory parallelism

SIMD

• Uses AVX instructions via immintrin.h

Optimization Strategies

• Seed filtering reduces DP workload
• Binary matrix output avoids I/O overhead
• Chunked processing of sequences

Progress Monitoring

• Rank 0 prints progress bar
• ETA estimation included