Output Format

The output consists of two aligned sequences printed line-by-line:

  • Green: matched characters
  • Red: gaps
  • Cyan: mismatches

Each output block includes the base range for easier visual indexing.

Future Improvements

  • Support multi-sequence alignment.
  • Allow multiple FASTA entries.
  • Export alignment results in standard formats (CLUSTAL, Stockholm).
  • Web-based or GUI interface.