Contributing

Development environment

git clone <repo-url>
cd hsp90-smfret-model
pip install -e ".[dev,docs]"

Quality checks

pytest --cov
ruff check .
ruff format .

Branch and PR conventions

• Branch naming: feat/<topic>, fix/<topic>, docs/<topic>, ci/<topic>.
• Keep commits focused and descriptive.
• Open PRs with:
• summary of scientific/technical intent,
• validation notes (tests + lint),
• output artifacts impacted (tables/plots/docs).

CI workflows

• Lint workflow (.github/workflows/lint.yml) enforces Ruff formatting and linting.
• Tests workflow (.github/workflows/tests.yml) runs pytest with coverage gates and uploads coverage.