Process Details¶

1. codon.pl¶

Generates codon usage statistics and GC content. - Input: FASTA - Output: results/metric.txt

2. longORF.pl¶

Detects the longest open reading frames. - Input: FASTA - Output: results/orf, results/orf.fasta

3. translate.pl¶

Translates the genomic sequence to protein. - Input: FASTA - Output: results/translated.fasta

4. hydropathy.pl¶

Calculates hydropathy values per amino acid. - Input: translated FASTA - Output: hplot.txt, hsummary.txt

5. plot_hydro.py¶

Generates a histogram plot of hydropathy values. - Input: hplot.txt - Output: hplot.png