Quick start

Prerequisites

• Nextflow >=23.10
• Either:
• local runtime dependencies (Perl modules + Python plotting stack), or
• Docker/Singularity profile for process containers.

1) Local profile

nextflow run . -profile local

2) Docker profile (containerized tasks)

nextflow run . -profile docker

3) Samplesheet mode (multi-chromosome-ready wiring)

nextflow run . -profile local --samplesheet assets/samplesheet.csv

4) Minimal smoke test profile

nextflow run . -profile test,local