GRmap¶
A Snakemake-driven pipeline to
- Match sequencing reads against a reference
- Annotate matched regions with gene, CpG, TSS, and repeat information
Key features
- Fast and efficient read matching
- Handles compressed FASTA and GFF/BED inputs
- Supports multiple read lengths and query sizes
- Configurable via
config.yaml - Outputs per-sample annotation files in
results/
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