fmindex.cpp File Reference

#include <algorithm>
#include <filesystem>
#include <fstream>
#include <iostream>
#include <map>
#include <numeric>
#include <stdexcept>
#include <string>
#include <vector>

Data Structures
class	FMIndex

Functions
std::vector< int >	suffix_array (const std::string &s)
bool	read_fasta_sequence (std::istream &in, std::string &header, std::string &sequence)
int	main (int argc, char *argv[])

Function Documentation

main()

int main	(	int	argc,
		char *	argv[]
	)

read_fasta_sequence()

bool read_fasta_sequence	(	std::istream &	in,
		std::string &	header,
		std::string &	sequence
	)

suffix_array()

std::vector< int > suffix_array

(

const std::string &

s

)