PhosKinTime
Python package for analyzing proteomics data, including time-course modelling and visualization.
Pharmacokinetic Modeling
Built an SBML-based ODE model of Tirzepatide to study how the drug is absorbed, distributed, and processed in the body.
GitHub |
SARS-CoV-2 lineage reconstruction
Nextflow-powered pipeline for SARS-CoV-2 genome reconstruction.
Genome Read Mapping and Annotation
Snakemake pipeline for matching sequencing reads to a reference genome and annotating genomic features.
Codon Analyzer
Snakemake workflow for codon usage analysis, GC content calculation, and protein hydropathy profiling.
Sequence Aligner
Accelerated sequence alignment using SIMD and MPI for scalable, distributed analysis.
Liver Prediction
ML-based classification of liver cancer tissues with transcriptomic & epigenomic analysis.
Prostate Cancer Biomarker Discovery
Identifying potent biomarkers for prostate cancer through pathway mining and gene-expression meta-analysis.
GitHub |