PhosKinTime
Python package for analyzing proteomics data, including time-course modelling and visualization.
Pharmacokinetic Modeling
Built an SBML-based ODE model of Tirzepatide to study how the drug is absorbed, distributed, and processed in the body.
GitHub | 
SARS-CoV-2 lineage reconstruction
Nextflow-powered pipeline for SARS-CoV-2 genome reconstruction.
Genome Read Mapping and Annotation
Snakemake pipeline for matching sequencing reads to a reference genome and annotating genomic features.
Codon Analyzer
Snakemake workflow for codon usage analysis, GC content calculation, and protein hydropathy profiling.
Sequence Aligner
Accelerated sequence alignment using SIMD and MPI for scalable, distributed analysis.
Liver Prediction
ML-based classification of liver cancer tissues with transcriptomic & epigenomic analysis.
Prostate Cancer Biomarker Discovery
Identifying potent biomarkers for prostate cancer through pathway mining and gene-expression meta-analysis.
GitHub |
Hsp90 smFRET Analysis Pipeline
Single-molecule FRET kinetic modelling with multistart optimisation, bootstrapping, and sensitivity analysis.
PyNetPhorest
Modern Python re-implementation of NetPhorest for kinase–substrate scoring and phosphorylation crosstalk analysis.
CasTuner (Python Port)
Reproducible modelling of CRISPR/Cas-based repression–derepression gene-tuning dynamics.