PhosKinTime

Python package for analyzing proteomics data, including time-course modelling and visualization.

GitHub | Docs | 


Pharmacokinetic Modeling

Built an SBML-based ODE model of Tirzepatide to study how the drug is absorbed, distributed, and processed in the body.

GitHub | 


SARS-CoV-2 lineage reconstruction

Nextflow-powered pipeline for SARS-CoV-2 genome reconstruction.

GitHub | Docs | 


Genome Read Mapping and Annotation

Snakemake pipeline for matching sequencing reads to a reference genome and annotating genomic features.

GitHub | Docs | 


Codon Analyzer

Snakemake workflow for codon usage analysis, GC content calculation, and protein hydropathy profiling.

GitHub | Docs | 


Sequence Aligner

Accelerated sequence alignment using SIMD and MPI for scalable, distributed analysis.

GitHub | Docs | 


Liver Prediction

ML-based classification of liver cancer tissues with transcriptomic & epigenomic analysis.

GitHub | Report


Prostate Cancer Biomarker Discovery

Identifying potent biomarkers for prostate cancer through pathway mining and gene-expression meta-analysis.

GitHub | DOI