CasTuner - Python Port
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Pipeline

  • Overview
  • Step 1 – Kinetics
  • Step 2 – Hill Curves
  • Step 3 – ODE Modelling
  • Step 4 – Noise Analysis
  • Step 5 – Design Scan
  • Step 6 – Goodness of Fit
  • Step 7 – Design Selection
  • Step 8 - Uncertainty Quantification & Sensitivity Analysis
  • Reproducibility
  • References
  • API Reference
    • Modules
CasTuner - Python Port
  • API Reference
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API Reference¶

Automatically generated from all .py modules in scripts/.

Modules¶

  • step_1a_fit_upregulation
  • step_1b_fit_downregulation
  • step_1c_fit_hill_curves
  • step_2_simulate_derepression
  • step_3_simulate_repression
  • step_4a_single_cell_hierarchical_noise
  • step_4b_model_driven_design_scan
  • step_5_visualize_noise_and_kinetics
  • step_6_goodness_of_fit
  • step_7_design_selection_and_map
  • step_8_sensitivity_uncertainty_and_distributions
  • step_9_generate_report
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